A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
/mnt/ngs-analysis/Data/GatkVariantCalling
General Statistics
| Sample Name | Vars | SNP | Indel | Ts/Tv | MNP | Multiallelic | Multiallelic SNP |
|---|---|---|---|---|---|---|---|
| SRR32572150_variants | 23 | 1 | 1 | 0.00 | 0 | 2 | 1 |
| SRR32572151_variants | 0 | 0 | 0 | 0.00 | 0 | 0 | 0 |
Bcftools
1.19
Utilities for variant calling and manipulating VCFs and BCFs.URL: https://samtools.github.io/bcftoolsDOI: 10.1093/gigascience/giab008
Variant Substitution Types
Variant Quality
Indel Distribution
Variant depths
Read depth support distribution for called variants
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Software | Version |
|---|---|
| Bcftools | 1.19 |